dgl.sampling.PinSAGESampler

class dgl.sampling.PinSAGESampler(G, ntype, other_type, num_traversals, termination_prob, num_random_walks, num_neighbors, weight_column='weights')[source]

PinSAGE-like neighbor sampler.

This callable works on a bidirectional bipartite graph with edge types (ntype, fwtype, other_type) and (other_type, bwtype, ntype) (where ntype, fwtype, bwtype and other_type could be arbitrary type names). It will generate a homogeneous graph of node type ntype where the neighbors of each given node are the most commonly visited nodes of the same type by multiple random walks starting from that given node. Each random walk consists of multiple metapath-based traversals, with a probability of termination after each traversal. The metapath is always [fwtype, bwtype], walking from node type ntype to node type other_type then back to ntype.

The edges of the returned homogeneous graph will connect to the given nodes from their most commonly visited nodes, with a feature indicating the number of visits.

UVA and GPU sampling is supported for this sampler. Refer to 6.7 Using GPU for Neighborhood Sampling for more details.

Parameters

  • G (DGLGraph) –

    The bidirectional bipartite graph.

    The graph should only have two node types: ntype and other_type. The graph should only have two edge types, one connecting from ntype to other_type, and another connecting from other_type to ntype.

  • ntype (str) – The node type for which the graph would be constructed on.

  • other_type (str) – The other node type.

  • num_traversals (int) –

    The maximum number of metapath-based traversals for a single random walk.

    Usually considered a hyperparameter.

  • termination_prob (int) –

    Termination probability after each metapath-based traversal.

    Usually considered a hyperparameter.

  • num_random_walks (int) –

    Number of random walks to try for each given node.

    Usually considered a hyperparameter.

  • num_neighbors (int) – Number of neighbors (or most commonly visited nodes) to select for each given node.

  • weight_column (str, default "weights") – The name of the edge feature to be stored on the returned graph with the number of visits.

Examples

Generate a random bidirectional bipartite graph with 3000 “A” nodes and 5000 “B” nodes.

>>> g = scipy.sparse.random(3000, 5000, 0.003)
>>> G = dgl.heterograph({
...     ('A', 'AB', 'B'): g.nonzero(),
...     ('B', 'BA', 'A'): g.T.nonzero()})

Then we create a PinSage neighbor sampler that samples a graph of node type “A”. Each node would have (a maximum of) 10 neighbors.

>>> sampler = dgl.sampling.PinSAGESampler(G, 'A', 'B', 3, 0.5, 200, 10)

This is how we select the neighbors for node #0, #1 and #2 of type “A” according to PinSAGE algorithm:

>>> seeds = torch.LongTensor([0, 1, 2])
>>> frontier = sampler(seeds)
>>> frontier.all_edges(form='uv')
(tensor([ 230,    0,  802,   47,   50, 1639, 1533,  406, 2110, 2687, 2408, 2823,
            0,  972, 1230, 1658, 2373, 1289, 1745, 2918, 1818, 1951, 1191, 1089,
         1282,  566, 2541, 1505, 1022,  812]),
 tensor([0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2,
         2, 2, 2, 2, 2, 2]))

For an end-to-end example of PinSAGE model, including sampling on multiple layers and computing with the sampled graphs, please refer to our PinSage example in examples/pytorch/pinsage.

References

Graph Convolutional Neural Networks for Web-Scale Recommender Systems

Ying et al., 2018, https://arxiv.org/abs/1806.01973

__init__(G, ntype, other_type, num_traversals, termination_prob, num_random_walks, num_neighbors, weight_column='weights')[source]

Initialize self. See help(type(self)) for accurate signature.

Methods

__init__(G, ntype, other_type, …[, …])

Initialize self.